已完成基因组测序的生物(植物部分)分析解析

已完成基因组测序的生物(植物部分)分析解析

水稻、玉米、大豆、甘蓝、白菜、高粱、黄瓜、西瓜、马铃薯、番茄、拟南芥、杨树、麻风树、苹果、桃、葡萄、花生

拟南芥籼稻粳稻葡萄番木瓜高粱黄瓜玉米栽培大豆苹果蓖麻野草莓马铃薯白菜野生番茄番茄梨甜瓜香蕉亚麻大麦普通小麦西瓜甜橙陆地棉梅毛竹桃芝麻杨树麻风树卷柏狗尾草属花生甘蓝

物种基因组大小和开放阅读框文献

Sesamum indicum L. Sesame 芝麻（2n = 26）293.7 Mb, 10,656 orfs 1

Oryza brachyantha短药野生稻261 Mb, 32,038 orfs 2

Chondrus crispus Red seaweed爱尔兰海藻105 Mb, 9,606 orfs 3

Pyropia yezoensis susabi-nori海苔43 Mb, 10,327 orfs 4

Prunus persica Peach 桃226.6 of 265 Mb 27,852 orfs 5

Aegilops tauschii 山羊草（DD）4.23 Gb (97% of the 4.36), 43,150 orfs 6 Triticum urartu 乌拉尔图小麦（AA）4.66 Gb (94.3 % of 4.94 Gb, 34,879 orfs 7 moso bamboo (Phyllostachys heterocycla) 毛竹2.05 Gb (95%) 31,987 orfs 8

Cicer arietinum Chickpea鹰嘴豆~738-Mb，28,269 orfs 9 520 Mb (70% of 740 Mb), 27,571 orfs 10

Prunus mume 梅280 Mb, 31,390 orfs 11

Gossypium hirsutum L.陆地棉2.425 Gb 12

Gossypium hirsutum L. 雷蒙德氏棉761.8?Mb 13

Citrus sinensis甜橙87.3% of ~367 Mb, 29,445 orfs 14

甜橙367 Mb 15

Citrullus lanatus watermelon 西瓜353.5 of ~425 Mb (83.2%) 23,440 orfs 16 Betula nana dwarf birch，矮桦450 Mb 17

已完成基因组测序的生物(植物部分)分析解析

Nannochloropsis oceanica CCMP1779微绿球藻（产油藻类之一）28.7 Mb，11,973 orfs 18

Triticum aestivum bread wheat普通小麦17 Gb, 94,000 and 96,000 orfs 19 Hordeum vulgare L. barley 大麦1.13 Gb of 5.1 Gb，26,159 high confidence orfs，53,000 low confidence orfs 20

Gossypium raimondii cotton 雷蒙德氏棉D subgenome,88% of 880 Mb 40,976 orfs 21

Linum usitatissimum flax 亚麻302 mb (81%), 43,384 orfs 22

Musa acuminata banana 香蕉472.2 of 523?Mb, 36,542 orfs 23

Cucumis melo L. melon 甜瓜375 Mb（83.3%）27,427 orfs 24

Pyrus bretschneideri Rehd. cv. Dangshansuli 梨（砀山酥梨）512.0 Mb (97.1%), 42,812 orfs 25,26

Solanum lycopersicum 番茄760/900 Mb，34727 orfs 27

S. pimpinellifolium LA1589野生番茄739 Mb

Setaria 狗尾草属（谷子、青狗尾草）400 Mb，25000-29000 orfs 28,29 Cajanus cajan pigeonpea木豆833 Mb，48,680 orfs 30

Nannochloropis gaditana 一种海藻~29 Mb, 9,052 orfs 31

Medicago truncatula蒺藜苜蓿350.2 Mb, 62,388 orfs 32

Brassica rapa 白菜485 Mb 33

Solanum tuberosum 马铃薯0.73 Mb,39031 orfs 34

Thellungiella parvula条叶蓝芥13.08 Mb 29,338 orfs 35

Arabidopsis lyrata lyrata 玉山筷子芥? 183.7 Mb, 32670 orfs 36

Fragaria vesca 野草莓240 Mb，34,809 orfs 37

Theobroma cacao 可可76% of 430 Mb, 28,798 orfs 38

Aureococcus anophagefferens褐潮藻32 Mb, 11501 orfs 39

已完成基因组测序的生物(植物部分)分析解析

Selaginella moellendorfii江南卷柏208.5 Mb, 34782 orfs 40

Jatropha curcas Palawan麻疯树285.9 Mb, 40929 orfs 41

Oryza glaberrima 光稃稻（非洲栽培稻）206.3 Mb (0.6x), 10 080 orfs (>70% coverage) 42

Phoenix dactylifera 棕枣380 Mb of 658 Mb, 25,059 orfs 43

Chlorella sp. NC64A小球藻属40000 Kb, 9791 orfs 44

Ricinus communis蓖麻325 Mb, 31,237 orfs 45

Malus domestica (Malus x domestica)苹果742.3 Mb 46

Volvox carteri f. nagariensis 69-1b一种团藻120 Mb, 14437 orfs 47 Brachypodium distachyon 短柄草272?Mb，25,532 orfs 48

Glycine max cultivar Williams 82栽培大豆1.1 Gb, 46430 orfs 49

Zea mays ssp. Mays Zea mays ssp. Parviglumis Zea mays ssp. Mexicana Tripsacum dactyloides var. meridionale 无法下载附表50

Zea mays mays cv. B73玉米2.06 Gb, 106046 orfs 51

Cucumis sativus 9930 黄瓜243.5 Mb, 63312 orfs 52

Micromonas pusilla金藻21.7 Mb, 10248 orfs 53

Sorghum bicolor 高粱697.6 Mb, 32886 orfs 54

Phaeodactylum tricornutum 三角褐指藻24.6 Mb, 9479 orfs 55

Carica papaya L. papaya 番木瓜271 Mb (75%), 28,629 orfs 56 Physcomitrella patens patens小立碗藓454 Mb, 35805 orfs 57

Vitis vinifera L. Pinot Noir, clone ENTAV 115葡萄504.6 Mb, 29585 orfs 58 Vitis vinifera PN40024葡萄475 Mb 59

Ostreococcus lucimarinus绿色鞭毛藻13.2 Mb, 7640 orfs 60 Chlamydomonas reinhardtii 莱茵衣藻100 Mb, 15256 orfs 61

已完成基因组测序的生物(植物部分)分析解析

Populus trichocarpa黑三角叶杨550 Mb, 45000 orfs 62

Ostreococcus tauri 绿藻12.6 Mb, 7892 orfs 63

Oryza sativa ssp. japonica 粳稻360.8 Mb, 37544 orfs 64

Thalassiosira pseudonana 硅藻25 Mb, 11242 orfs 65

Cyanidioschyzon merolae 10D红藻16.5 Mb, 5331 orfs 66

Oryza sativa ssp. japonica粳稻420 Mb, 50000 orfs 67

Oryza sativa L. ssp. Indica籼稻420 Mb, 59855 orfs 68

Guillardia theta -蓝隐藻，551 Kb, 553 orfs 69

Arabidopsis thaliana Columbia拟南芥119.7 Mb, 31392 orfs 70

参考文献

1 Zhang, H. et al. Genome sequencing of the important oilseed crop Sesamum indicum L. Genome Biology 14, 401 (2013).

2 Chen, J. et al. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nat Commun 4, 1595 (2013).

3 Collén, J. et al. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proceedings of the National Academy of Sciences 110, 5247-5252 (2013).

4 Nakamura, Y. et al. The first symbiont-free genome sequence of marine red alga, susabi-nori Pyropia yezoensis. PLoS ONE 8, e57122 (2013).

5 Verde, I. et al. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic persity, domestication and genome evolution. Nature Genetics advance online publication (2013).

6 Jia, J. et al. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 496, 91-95 (2013).

7 Ling, H.-Q. et al. Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 496, 87-90 (2013).

8 Peng, Z. et al. The draft genome of the fast-growing non-timber forest species moso bamboo …… 此处隐藏：11537字，全部文档内容请下载后查看。喜欢就下载吧 ……